SMTL ID : 6c39.2 (1 other biounit)

Apo crystal structure of wild-type S. aureus penicillin binding protein 4 (PBP4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.320, H.366 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.320 ZN.2: 2 residues within 4Å: Chain A: E.293, D.297 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.297, H2O.1, H2O.5, H2O.8, H2O.9, H2O.11 ZN.3: 2 residues within 4Å: Chain A: E.341, H.346 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.341, H2O.11

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: K.337, D.348, Y.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.348

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 7 residues within 4Å: Chain A: S.59, S.123, F.225, K.243, T.244, G.245, S.246 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.59, A:S.123, A:T.244, A:T.244, A:S.246 Water bridges: A:S.246, A:S.246 Salt bridges: A:K.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alexander, J.A.N. et al., Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance inStaphylococcus aureus. J. Biol. Chem. (2018)

Release Date

2018-11-07

Peptides

Serine-type D-Ala-D-Ala carboxypeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine-type D-Ala-D-Ala carboxypeptidase

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