SMTL ID : 7kcy.1

Crystal structure of S. aureus penicillin-binding protein 4 (PBP4) with cefoxitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 1S7: (2R)-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

1S7.1: 21 residues within 4Å: Chain A: A.58, S.59, K.62, E.98, L.99, S.100, S.123, N.125, T.164, G.165, A.166, R.170, F.225, K.243, T.244, G.245, S.246, S.247, D.248, Y.275, R.284 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.59, A:K.62, A:S.123, A:N.125, A:T.244, A:S.246, A:S.246, A:S.246 Water bridges: A:S.246 Salt bridges: A:K.243

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Q.41, T.42, R.264, Y.301 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.259, A:K.259

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: V.339, H.346, D.348, P.360 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.346, A:D.348, A:D.348, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satishkumar, N. et al., PBP4-mediated beta-lactam resistance among clinical strains of Staphylococcus aureus. J.Antimicrob.Chemother. (2021)

Release Date

2021-06-30

Peptides

Penicillin-binding protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 4

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