SMTL ID : 6c3n.1

Crystal structure of BCL6 BTB domain in complex with compound 7CC5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

homo-dimer

Ligands

2 x EHY: N-(2-phenylethyl)-N'-pyridin-3-ylthiourea(Non-covalent)

EHY.1: 7 residues within 4Å: Chain A: M.53, A.54, G.57, Y.60 Chain B: N.23, R.26, L.27 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.60, A:Y.60 Hydrogen bonds: A:M.53 Water bridges: B:N.23, B:N.23 EHY.2: 8 residues within 4Å: Chain A: N.23, R.26, L.27 Chain B: M.53, A.54, S.56, G.57, Y.60 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.60, B:Y.60 Hydrogen bonds: B:M.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, H. et al., Identification of Thiourea-Based Inhibitors of the B-Cell Lymphoma 6 BTB Domain via NMR-Based Fragment Screening and Computer-Aided Drug Design. J.Med.Chem. (2018)

Release Date

2019-01-16

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B-cell lymphoma 6 protein

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