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SMTL ID : 6c8q.1
(3 other biounits)
Crystal structure of NAD synthetase (NadE) from Enterococcus faecalis in complex with NAD+
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.58 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
18 residues within 4Å:
Chain A:
F.133
,
N.137
,
R.141
,
F.171
,
F.172
,
T.173
,
K.174
,
A.227
,
H.261
,
K.262
Chain B:
Y.34
,
H.38
,
L.41
,
Y.148
,
A.151
,
G.152
,
G.156
,
D.181
18
PLIP interactions
:
13 interactions with chain A
,
5 interactions with chain B
Hydrophobic interactions:
A:F.133
,
A:F.133
Hydrogen bonds:
A:N.137
,
A:F.172
,
A:K.174
,
B:Y.34
,
B:Y.34
,
B:G.156
,
B:V.158
Water bridges:
A:N.134
,
A:N.137
,
A:R.141
,
B:G.152
Salt bridges:
A:R.141
,
A:K.262
,
A:K.262
pi-Stacking:
A:H.261
,
A:H.261
NAD.2:
18 residues within 4Å:
Chain A:
Y.34
,
H.38
,
F.40
,
Y.148
,
G.152
,
G.156
,
D.181
Chain B:
F.133
,
N.137
,
R.141
,
A.170
,
F.171
,
F.172
,
T.173
,
K.174
,
A.227
,
H.261
,
K.262
18
PLIP interactions
:
15 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:F.133
Hydrogen bonds:
B:N.137
,
B:A.170
,
B:F.171
,
B:K.174
,
A:Y.34
,
A:H.38
,
A:G.156
Water bridges:
B:N.137
,
B:R.141
,
B:R.141
,
B:T.173
,
B:T.173
Salt bridges:
B:R.141
,
B:K.262
,
B:K.262
pi-Stacking:
B:H.261
,
B:H.261
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Inniss, N.L. et al., Structural genomics of bacterial drug targets: Application of a high-throughput pipeline to solve 58 protein structures from pathogenic and related bacteria. Microbiol Resour Announc (2025)
Release Date
2018-02-14
Peptides
NH(3)-dependent NAD(+) synthetase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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NH(3)-dependent NAD(+) synthetase
Related Entries With Identical Sequence
6c8q.2
|
6c8q.3
|
6c8q.4
Cartoon
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Tube
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