SMTL ID : 6c8q.1 (3 other biounits)

Crystal structure of NAD synthetase (NadE) from Enterococcus faecalis in complex with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 18 residues within 4Å: Chain A: F.133, N.137, R.141, F.171, F.172, T.173, K.174, A.227, H.261, K.262 Chain B: Y.34, H.38, L.41, Y.148, A.151, G.152, G.156, D.181 18 PLIP interactions: 13 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.133, A:F.133 Hydrogen bonds: A:N.137, A:F.172, A:K.174, B:Y.34, B:Y.34, B:G.156, B:V.158 Water bridges: A:N.134, A:N.137, A:R.141, B:G.152 Salt bridges: A:R.141, A:K.262, A:K.262 pi-Stacking: A:H.261, A:H.261 NAD.2: 18 residues within 4Å: Chain A: Y.34, H.38, F.40, Y.148, G.152, G.156, D.181 Chain B: F.133, N.137, R.141, A.170, F.171, F.172, T.173, K.174, A.227, H.261, K.262 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.133 Hydrogen bonds: B:N.137, B:A.170, B:F.171, B:K.174, A:Y.34, A:H.38, A:G.156 Water bridges: B:N.137, B:R.141, B:R.141, B:T.173, B:T.173 Salt bridges: B:R.141, B:K.262, B:K.262 pi-Stacking: B:H.261, B:H.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inniss, N.L. et al., Structural genomics of bacterial drug targets: Application of a high-throughput pipeline to solve 58 protein structures from pathogenic and related bacteria. Microbiol Resour Announc (2025)

Release Date

2018-02-14

Peptides

NH(3)-dependent NAD(+) synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NH(3)-dependent NAD(+) synthetase

Related Entries With Identical Sequence