SMTL ID : 6c8q.3 (3 other biounits)

Crystal structure of NAD synthetase (NadE) from Enterococcus faecalis in complex with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 18 residues within 4Å: Chain A: F.133, N.137, R.141, F.171, F.172, T.173, K.174, H.261, K.262 Chain B: Y.34, H.38, F.40, L.41, Y.148, A.151, G.156, A.157, D.181 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.137, A:F.171, A:K.174, A:K.174, B:H.38, B:G.156 Water bridges: A:R.141, A:R.141, A:H.261 Salt bridges: A:R.141, A:K.262, A:K.262 pi-Stacking: A:H.261, A:H.261 NAD.2: 17 residues within 4Å: Chain A: Y.34, H.38, L.41, Y.148, G.156, A.157, D.181 Chain B: F.133, G.136, N.137, R.141, F.171, F.172, T.173, K.174, H.261, K.262 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.133, B:F.133 Hydrogen bonds: B:N.137, B:F.171, B:T.173, B:K.174, A:H.38, A:G.156 Salt bridges: B:R.141, B:K.262, B:K.262 pi-Stacking: B:H.261, B:H.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inniss, N.L. et al., Structural genomics of bacterial drug targets: Application of a high-throughput pipeline to solve 58 protein structures from pathogenic and related bacteria. Microbiol Resour Announc (2025)

Release Date

2018-02-14

Peptides

NH(3)-dependent NAD(+) synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

NH(3)-dependent NAD(+) synthetase

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