SMTL ID : 6cax.1

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT805

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x EUY: (2R)-N-hydroxy-2-methyl-2-(methylsulfonyl)-4-{2-oxo-4-[4-(2H-1,2,3-triazol-2-yl)phenyl]pyridin-1(2H)-yl}butanamide(Non-covalent)

EUY.1: 20 residues within 4Å: Chain A: L.19, H.20, M.63, E.78, H.79, T.191, F.192, G.193, F.194, M.195, I.198, G.210, S.211, A.215, V.217, H.238, K.239, D.242, H.265 Ligands: ZN.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.198, A:V.217 Hydrogen bonds: A:M.63, A:E.78 Water bridges: A:R.202 pi-Cation interactions: A:R.202 EUY.2: 16 residues within 4Å: Chain A: A.85, G.86, F.153, F.177, S.178, S.179, T.180, S.181, F.182, I.244, Y.248, S.253, L.254, I.295, S.296, M.298 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.153, A:F.153, A:F.177, A:F.182, A:I.295 Hydrogen bonds: A:F.182, A:L.254 Water bridges: A:T.180, A:T.180, A:S.181, A:V.183, A:K.184, A:K.184 pi-Stacking: A:F.153, A:F.177, A:Y.248

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: H.79, T.191, H.238, D.242 Ligands: EUY.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.79, A:H.238, A:D.242, A:D.242 ZN.4: 2 residues within 4Å: Chain A: D.278, D.280 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.278, H2O.2

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: K.143, G.264, A.266, L.267 Ligand excluded by PLIP

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: K.30, Y.93 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: H.20, T.62, M.63, S.64, D.75, L.206 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: G.109, V.112, F.113, V.183, S.187, R.188 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: E.139, G.141 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: R.222, V.223, L.224 Ligand excluded by PLIP EDO.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.12: 1 residues within 4Å: Chain A: E.140 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: R.190, V.212, N.225, E.226, D.227 Ligand excluded by PLIP EDO.14: 1 residues within 4Å: Chain A: R.273 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: H.163, F.194, R.196, D.197 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: R.169, T.170, Q.171, Q.172 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain A: E.23, K.24 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: D.151 Ligands: EDO.19 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain A: R.131, P.149, F.150, D.151 Ligands: EDO.18 Ligand excluded by PLIP EDO.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.21: 2 residues within 4Å: Chain A: A.290, R.291 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain A: L.45, D.46 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phan, J.N. et al., Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT805. to be published

Release Date

2019-02-13

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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