SMTL ID : 6dui.1

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x HAY: (2R)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide(Non-covalent)

HAY.1: 22 residues within 4Å: Chain A: L.19, H.20, M.63, E.78, H.79, T.191, F.192, G.193, F.194, M.195, I.198, L.201, G.210, A.215, V.217, L.224, H.238, K.239, D.242, H.265 Ligands: J1M.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.198, A:L.201, A:A.215, A:V.217, A:L.224 Hydrogen bonds: A:M.63, A:E.78, A:E.78

1 x J1M: (2S)-4-{4-[4-(benzyloxy)phenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide(Non-covalent)

J1M.2: 20 residues within 4Å: Chain A: L.19, M.63, S.64, E.78, H.79, T.191, F.192, G.193, F.194, I.198, L.201, R.202, G.210, A.215, V.217, H.238, D.242, H.265 Ligands: HAY.1, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.198, A:I.198, A:L.201, A:A.215, A:V.217, A:V.217 Hydrogen bonds: A:E.78, A:H.265

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: H.79, T.191, H.238, D.242 Ligands: HAY.1, J1M.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.79, A:H.238, A:D.242, A:D.242

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: K.143, G.264, A.266, L.267 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: Y.231, E.232, D.233, K.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.232, A:D.233 EDO.6: 4 residues within 4Å: Chain A: M.2, A.126, T.286, E.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phan, J.N. et al., Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PT801. to be published

Release Date

2019-06-26

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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