SMTL ID : 6cba.1

Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and canavanine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.191, D.193, H.270, F.285 Ligands: AKG.2, GGB.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.191, A:D.193, A:D.193, A:H.270, H2O.1

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 16 residues within 4Å: Chain A: R.173, L.175, F.177, I.188, H.191, D.193, A.200, L.208, H.270, V.272, R.279, A.281, A.283, F.285 Ligands: MN.1, GGB.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.175 Salt bridges: A:R.173, A:H.191, A:R.279

1 x GGB: L-CANAVANINE(Non-covalent)

GGB.3: 17 residues within 4Å: Chain A: E.86, V.87, T.88, A.89, D.93, R.173, I.188, H.191, D.193, Y.194, A.230, F.285, F.316, R.318, C.319 Ligands: MN.1, AKG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.191 Hydrogen bonds: A:E.86, A:V.87, A:Y.194 Water bridges: A:A.89, A:D.93, A:R.318 Salt bridges: A:E.86, A:D.193, A:R.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatterjee, S. et al., Structural, Spectroscopic, and Computational Insights from Canavanine-Bound and Two Catalytically Compromised Variants of the Ethylene-Forming Enzyme. Biochemistry (2024)

Release Date

2019-02-06

Peptides

2-oxoglutarate-dependent ethylene/succinate-forming enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-oxoglutarate-dependent ethylene/succinate-forming enzyme

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