SMTL ID : 6cgq.1

Threonine synthase from Bacillus subtilis ATCC 6633 with PLP and PLP-Ala

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 17 residues within 4Å: Chain A: S.59, F.60, K.61, N.87, P.185, V.186, G.187, N.188, A.189, G.190, N.191, A.239, I.240, E.286, S.289, T.316, G.317 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.60, A:K.61, A:A.239, A:E.286 Hydrogen bonds: A:S.59, A:S.59, A:K.61, A:N.87, A:G.187, A:N.188, A:A.189, A:N.191, A:T.316 Water bridges: A:N.188, A:G.190, A:G.190, A:N.191, A:I.192 Salt bridges: A:K.61 pi-Stacking: A:F.60

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain B: K.61, T.88, F.134, N.154, S.155, R.160, N.188 Ligands: F0G.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.154, B:S.155, B:S.155, B:S.155, B:N.188 Water bridges: B:S.155, B:S.155, B:R.160 Salt bridges: B:K.61, B:R.160

1 x F0G: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine(Non-covalent)

F0G.3: 24 residues within 4Å: Chain B: F.60, K.61, A.83, S.84, T.85, G.86, N.87, T.88, F.134, P.185, V.186, G.187, N.188, A.189, G.190, N.191, A.239, I.240, I.242, E.286, S.289, T.316, G.317 Ligands: PO4.2 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:A.239, B:I.240, B:I.242, B:E.286 Hydrogen bonds: B:K.61, B:T.85, B:G.86, B:N.87, B:N.87, B:T.88, B:T.88, B:G.187, B:N.188, B:A.189, B:G.190, B:N.191 Water bridges: B:K.61, B:T.85, B:K.116, B:I.192 Salt bridges: B:K.61, B:K.61 pi-Stacking: B:F.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petronikolou, N. et al., Molecular Basis of Bacillus subtilis ATCC 6633 Self-Resistance to the Phosphono-oligopeptide Antibiotic Rhizocticin. ACS Chem. Biol. (2019)

Release Date

2019-02-27

Peptides

Threonine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Threonine synthase

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