- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x ETE: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x PDO: 1,3-PROPANDIOL(Non-covalent)(Non-functional Binders)
PDO.12: 3 residues within 4Å:- Chain A: V.31, T.32, C.33
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.33
PDO.13: 2 residues within 4Å:- Chain A: I.117, I.119
No protein-ligand interaction detected (PLIP)PDO.14: 1 residues within 4Å:- Ligands: PGO.31
No protein-ligand interaction detected (PLIP)- 12 x EOH: ETHANOL(Non-functional Binders)
EOH.15: 2 residues within 4Å:- Chain A: E.3, K.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.3, A:K.5
EOH.16: 2 residues within 4Å:- Chain A: C.33, D.118
No protein-ligand interaction detected (PLIP)EOH.17: 6 residues within 4Å:- Chain A: V.67, I.91, D.92, D.95, A.99, S.101
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:D.92, A:D.95
EOH.18: 1 residues within 4Å:- Chain A: D.94
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.94, A:D.94
EOH.19: 4 residues within 4Å:- Chain A: T.4, N.46, C.47, H.134
No protein-ligand interaction detected (PLIP)EOH.20: 3 residues within 4Å:- Chain A: P.78, E.79, R.82
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.79
EOH.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)EOH.22: 2 residues within 4Å:- Chain A: I.116, I.117
No protein-ligand interaction detected (PLIP)EOH.23: 3 residues within 4Å:- Chain A: V.96, S.98, A.99
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.96
- Hydrogen bonds: A:S.98
EOH.24: 2 residues within 4Å:- Chain A: K.80, D.81
No protein-ligand interaction detected (PLIP)EOH.25: 1 residues within 4Å:- Ligands: PG4.1
No protein-ligand interaction detected (PLIP)EOH.26: 1 residues within 4Å:- Chain A: I.117
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.117
- 3 x MOH: METHANOL(Non-functional Binders)
MOH.27: 2 residues within 4Å:- Chain A: N.106
- Ligands: PGO.30
No protein-ligand interaction detected (PLIP)MOH.28: 3 residues within 4Å:- Chain A: L.22, A.23, N.30
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.30
MOH.29: 5 residues within 4Å:- Chain A: Q.20, K.21, Q.24
- Ligands: EDO.10, ETX.34
No protein-ligand interaction detected (PLIP)- 3 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.30: 4 residues within 4Å:- Chain A: K.105, N.106
- Ligands: EDO.11, MOH.27
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.105
PGO.31: 2 residues within 4Å:- Chain A: D.92
- Ligands: PDO.14
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.92
- Water bridges: A:G.90
PGO.32: 4 residues within 4Å:- Chain A: E.6, D.16, L.136, Q.138
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.136
- Hydrogen bonds: A:E.6, A:D.16, A:Q.138
- Water bridges: A:N.12
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x ETX: 2-ETHOXYETHANOL(Non-covalent)
ETX.34: 4 residues within 4Å:- Chain A: S.17, Q.20, E.72
- Ligands: MOH.29
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Q.20
- Hydrogen bonds: A:Q.20
ETX.35: 4 residues within 4Å:- Chain A: A.34, S.59, S.144, E.146
No protein-ligand interaction detected (PLIP)ETX.36: 1 residues within 4Å:- Chain A: R.60
1 PLIP interactions:1 interactions with chain A- Water bridges: A:S.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diesterbeck, U.S. et al., The 2.1 angstrom structure of protein F9 and its comparison to L1, two components of the conserved poxvirus entry-fusion complex. Sci Rep (2018)
- Release Date
- 2019-03-06
- Peptides
- Protein F9: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x ETE: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x PDO: 1,3-PROPANDIOL(Non-covalent)(Non-functional Binders)
- 12 x EOH: ETHANOL(Non-functional Binders)
- 3 x MOH: METHANOL(Non-functional Binders)
- 3 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x ETX: 2-ETHOXYETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diesterbeck, U.S. et al., The 2.1 angstrom structure of protein F9 and its comparison to L1, two components of the conserved poxvirus entry-fusion complex. Sci Rep (2018)
- Release Date
- 2019-03-06
- Peptides
- Protein F9: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B