- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 7 residues within 4Å:- Chain A: L.13, S.17, Q.20, K.21, E.72
- Ligands: PG0.3, EDO.18
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.17, A:Q.20, A:K.21
PEG.6: 6 residues within 4Å:- Chain A: L.19, R.50, T.52, K.54, Q.138, I.139
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.52, A:T.52, A:I.139
PEG.7: 1 residues within 4Å:- Ligands: P6G.9
No protein-ligand interaction detected (PLIP)- 3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
P6G.8: 14 residues within 4Å:- Chain A: S.59, R.60, N.108, A.111, E.112, N.115, I.116, S.144, A.145, E.146
- Ligands: PG0.4, EDO.14, EDO.19, EOH.36
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.59, A:S.59, A:R.60, A:N.108, A:A.145, A:E.146
P6G.9: 1 residues within 4Å:- Ligands: PEG.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.118
P6G.10: 4 residues within 4Å:- Chain A: E.87, E.88
- Ligands: EDO.21, PGE.48
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.88
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 3 residues within 4Å:- Chain A: E.87, I.91, D.92
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.83
EDO.12: 5 residues within 4Å:- Chain A: R.60, L.61, T.64, S.98
- Ligands: GOL.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.60, A:T.64
EDO.13: 2 residues within 4Å:- Chain A: H.25, E.68
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.68
EDO.14: 2 residues within 4Å:- Chain A: A.34
- Ligands: P6G.8
No protein-ligand interaction detected (PLIP)EDO.15: 5 residues within 4Å:- Chain A: I.41, G.42, Q.43, D.123, G.125
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.43, A:G.125
EDO.16: 3 residues within 4Å:- Chain A: R.82, L.93
- Ligands: MOH.44
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.82, A:R.82
EDO.17: 1 residues within 4Å:- Ligands: PG4.1
No protein-ligand interaction detected (PLIP)EDO.18: 3 residues within 4Å:- Chain A: E.72, L.76
- Ligands: PEG.5
No protein-ligand interaction detected (PLIP)EDO.19: 2 residues within 4Å:- Chain A: E.112
- Ligands: P6G.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.112, A:E.112
EDO.20: 2 residues within 4Å:- Ligands: PG4.2, PG0.4
No protein-ligand interaction detected (PLIP)EDO.21: 1 residues within 4Å:- Ligands: P6G.10
No protein-ligand interaction detected (PLIP)- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.23: 3 residues within 4Å:- Chain A: C.33, H.36, N.53
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:N.53
- Hydrogen bonds: A:C.33, A:H.36, A:N.53
PDO.24: 9 residues within 4Å:- Chain A: V.67, G.90, I.91, D.92, D.95, A.99, V.100, S.101, K.102
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:D.92
- Hydrogen bonds: A:D.92, A:A.99, A:K.102
- Water bridges: A:D.92
- 12 x EOH: ETHANOL(Non-functional Binders)
EOH.25: 3 residues within 4Å:- Chain A: K.102
- Ligands: PG4.2, PG0.4
No protein-ligand interaction detected (PLIP)EOH.26: 1 residues within 4Å:- Chain A: E.87
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.87
EOH.27: 2 residues within 4Å:- Chain A: K.45, P.131
No protein-ligand interaction detected (PLIP)EOH.28: 1 residues within 4Å:- Ligands: PG4.1
No protein-ligand interaction detected (PLIP)EOH.29: 1 residues within 4Å:- Chain A: D.94
No protein-ligand interaction detected (PLIP)EOH.30: 3 residues within 4Å:- Ligands: PG0.3, EOH.32, ETX.49
No protein-ligand interaction detected (PLIP)EOH.31: 5 residues within 4Å:- Chain A: T.32, C.33, A.34
- Ligands: MOH.42, PGO.47
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.32, A:T.32
EOH.32: 5 residues within 4Å:- Chain A: D.16, L.19, Q.138
- Ligands: EOH.30, ETX.50
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.19
- Hydrogen bonds: A:D.16, A:Q.138, A:Q.138
EOH.33: 1 residues within 4Å:- Chain A: K.156
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.156
- Water bridges: A:E.126
EOH.34: 1 residues within 4Å:- Chain A: N.46
No protein-ligand interaction detected (PLIP)EOH.35: 5 residues within 4Å:- Chain A: T.29, A.34, M.56, S.57, G.143
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.34
- Hydrogen bonds: A:G.143
EOH.36: 3 residues within 4Å:- Chain A: N.58, R.60
- Ligands: P6G.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.58
- 8 x MOH: METHANOL(Non-functional Binders)
MOH.37: 3 residues within 4Å:- Chain A: E.68, I.71, P.97
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.68
MOH.38: 1 residues within 4Å:- Chain A: E.3
No protein-ligand interaction detected (PLIP)MOH.39: 3 residues within 4Å:- Chain A: E.79, K.80, R.83
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.79
MOH.40: 1 residues within 4Å:- Chain A: Q.20
No protein-ligand interaction detected (PLIP)MOH.41: 1 residues within 4Å:- Chain A: V.31
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.31
MOH.42: 3 residues within 4Å:- Chain A: D.118
- Ligands: EOH.31, PGO.47
No protein-ligand interaction detected (PLIP)MOH.43: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MOH.44: 2 residues within 4Å:- Chain A: R.83
- Ligands: EDO.16
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.83
- 3 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.45: 2 residues within 4Å:- Chain A: N.53, K.54
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.53
PGO.46: 3 residues within 4Å:- Chain A: H.25, S.26, I.27
No protein-ligand interaction detected (PLIP)PGO.47: 6 residues within 4Å:- Chain A: C.33, A.34, H.36, D.118
- Ligands: EOH.31, MOH.42
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.34
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x ETX: 2-ETHOXYETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diesterbeck, U.S. et al., The 2.1 angstrom structure of protein F9 and its comparison to L1, two components of the conserved poxvirus entry-fusion complex. Sci Rep (2018)
- Release Date
- 2019-03-06
- Peptides
- Protein F9: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PDO: 1,3-PROPANDIOL(Non-covalent)
- 12 x EOH: ETHANOL(Non-functional Binders)
- 8 x MOH: METHANOL(Non-functional Binders)
- 3 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x ETX: 2-ETHOXYETHANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diesterbeck, U.S. et al., The 2.1 angstrom structure of protein F9 and its comparison to L1, two components of the conserved poxvirus entry-fusion complex. Sci Rep (2018)
- Release Date
- 2019-03-06
- Peptides
- Protein F9: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
D