SMTL ID : 6cm4.1

Structure of the D2 Dopamine Receptor Bound to the Atypical Antipsychotic Drug Risperidone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

monomer

Ligands

1 x 8NU: 3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one(Non-covalent)

8NU.1: 17 residues within 4Å: Chain A: W.66, F.76, D.80, V.81, C.84, T.85, A.88, S.159, S.163, F.164, F.369, W.373, F.376, F.377, Y.395, T.399, Y.403 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.66, A:F.76, A:V.81, A:W.373, A:F.377, A:Y.395, A:T.399 Salt bridges: A:D.80 pi-Stacking: A:W.373, A:W.373

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: L.89, A.93, M.121, I.124 No protein-ligand interaction detected (PLIP) PEG.3: 6 residues within 4Å: Chain A: Y.175, L.182, R.186, Q.360, A.363 Ligands: OLA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.186 PEG.4: 2 residues within 4Å: Chain A: P.55, W.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.55

3 x OLA: OLEIC ACID(Non-covalent)

OLA.5: 3 residues within 4Å: Chain A: Y.99, V.174 Ligands: OLA.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.99, A:V.174 OLA.6: 10 residues within 4Å: Chain A: A.88, P.167, F.168, T.171, L.172, Y.175, A.366, F.369, I.370 Ligands: PEG.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.88, A:P.167, A:T.171, A:L.172, A:Y.175, A:A.366, A:F.369, A:F.369, A:I.370, A:I.370 OLA.7: 2 residues within 4Å: Chain A: R.117 Ligands: OLA.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Structure of the D2 dopamine receptor bound to the atypical antipsychotic drug risperidone. Nature (2018)

Release Date

2018-03-14

Peptides

D(2) dopamine receptor, endolysin chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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D(2) dopamine receptor, endolysin chimera

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