- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.50 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)
POV.5: 4 residues within 4Å:- Chain D: F.49, H.236, S.238, L.241
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:L.241
- Salt bridges: D:H.236
POV.8: 5 residues within 4Å:- Chain A: F.49, L.217, H.236, S.238, L.241
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.217, A:L.241
- Salt bridges: A:H.236
POV.11: 5 residues within 4Å:- Chain B: F.49, L.217, H.236, S.238, L.241
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.217, B:L.241
- Salt bridges: B:H.236
POV.14: 5 residues within 4Å:- Chain C: F.49, L.217, H.236, S.238, L.241
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:L.217, C:L.241
- Salt bridges: C:H.236
- 8 x LMT: DODECYL-BETA-D-MALTOSIDE(Covalent)(Non-covalent)
LMT.6: 8 residues within 4Å:- Chain A: G.259, M.261, K.264, I.265, L.268
- Chain D: W.216, S.238, L.241
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:K.264, A:I.265, A:L.268, D:W.216
- Hydrogen bonds: A:G.259
- Salt bridges: A:K.264
LMT.7: 9 residues within 4Å:- Chain A: F.144, L.145, G.146, A.150, L.154, A.226, W.262, I.265, V.266
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.154, A:A.226, A:W.262, A:W.262, A:W.262, A:I.265, A:V.266
- Hydrogen bonds: A:L.145
LMT.9: 8 residues within 4Å:- Chain A: W.216, S.238, L.241
- Chain B: G.259, M.261, K.264, I.265, L.268
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:K.264, B:I.265, B:L.268, A:W.216
- Hydrogen bonds: B:G.259
- Salt bridges: B:K.264
LMT.10: 9 residues within 4Å:- Chain B: F.144, L.145, G.146, A.150, L.154, A.226, W.262, I.265, V.266
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.154, B:A.226, B:W.262, B:W.262, B:W.262, B:I.265, B:V.266
- Hydrogen bonds: B:L.145
LMT.12: 8 residues within 4Å:- Chain B: W.216, S.238, L.241
- Chain C: G.259, M.261, K.264, I.265, L.268
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:W.216, C:K.264, C:I.265, C:L.268
- Hydrogen bonds: C:G.259
- Salt bridges: C:K.264
LMT.13: 9 residues within 4Å:- Chain C: F.144, L.145, G.146, A.150, L.154, A.226, W.262, I.265, V.266
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.154, C:A.226, C:W.262, C:W.262, C:W.262, C:I.265, C:V.266
- Hydrogen bonds: C:L.145
LMT.15: 8 residues within 4Å:- Chain C: W.216, S.238, L.241
- Chain D: G.259, M.261, K.264, I.265, L.268
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:K.264, D:I.265, D:L.268, C:W.216
- Hydrogen bonds: D:G.259
- Salt bridges: D:K.264
LMT.16: 9 residues within 4Å:- Chain D: F.144, L.145, G.146, A.150, L.154, A.226, W.262, I.265, V.266
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:L.154, D:A.226, D:W.262, D:W.262, D:W.262, D:I.265, D:V.266
- Hydrogen bonds: D:L.145
- 12 x CA: CALCIUM ION(Non-covalent)
CA.17: 5 residues within 4Å:- Chain E: D.21, D.23, D.25, T.27, E.32
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.21, E:D.23, E:D.25, E:T.27, E:E.32
CA.18: 5 residues within 4Å:- Chain E: D.57, D.59, N.61, T.63, E.68
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.57, E:D.59, E:T.63, E:E.68, E:E.68
CA.19: 6 residues within 4Å:- Chain E: D.94, D.96, N.98, Y.100, I.101, E.105
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.94, E:D.96, E:Y.100, E:E.105, E:E.105
CA.20: 5 residues within 4Å:- Chain F: D.21, D.23, D.25, T.27, E.32
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.21, F:D.23, F:D.25, F:T.27, F:E.32
CA.21: 5 residues within 4Å:- Chain F: D.57, D.59, N.61, T.63, E.68
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.57, F:D.59, F:T.63, F:E.68, F:E.68
CA.22: 6 residues within 4Å:- Chain F: D.94, D.96, N.98, Y.100, I.101, E.105
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.94, F:D.96, F:Y.100, F:E.105, F:E.105
CA.23: 5 residues within 4Å:- Chain G: D.21, D.23, D.25, T.27, E.32
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.21, G:D.23, G:D.25, G:T.27, G:E.32
CA.24: 5 residues within 4Å:- Chain G: D.57, D.59, N.61, T.63, E.68
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.57, G:D.59, G:T.63, G:E.68, G:E.68
CA.25: 6 residues within 4Å:- Chain G: D.94, D.96, N.98, Y.100, I.101, E.105
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.94, G:D.96, G:Y.100, G:E.105, G:E.105
CA.26: 5 residues within 4Å:- Chain H: D.21, D.23, D.25, T.27, E.32
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.21, H:D.23, H:D.25, H:T.27, H:E.32
CA.27: 5 residues within 4Å:- Chain H: D.57, D.59, N.61, T.63, E.68
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.57, H:D.59, H:T.63, H:E.68, H:E.68
CA.28: 6 residues within 4Å:- Chain H: D.94, D.96, N.98, Y.100, I.101, E.105
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.94, H:D.96, H:Y.100, H:E.105, H:E.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, C.H. et al., Activation mechanism of a human SK-calmodulin channel complex elucidated by cryo-EM structures. Science (2018)
- Release Date
- 2018-05-02
- Peptides
- Intermediate conductance calcium-activated potassium channel protein 4: ABCD
Calmodulin-1: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 6cnn.1
Cryo-EM structure of the human SK4/calmodulin channel complex in the Ca2+ bound state I
Intermediate conductance calcium-activated potassium channel protein 4
Toggle Identical (ABCD)Calmodulin-1
Toggle Identical (EFGH)Related Entries With Identical Sequence
1iq5.1 | 1lvc.1 | 1lvc.2 | 1lvc.3 | 1wrz.1 | 2bki.1 | 2r28.1 | 2v01.1 | 2v02.1 | 2w73.1 | 2w73.2 | 2y4v.1 | 3hr4.1 | 3hr4.2 | 3hr4.3 | 3hr4.4 | 3j41.1 | 3oxq.1 | 3oxq.2 | 3sjq.1 | 3sui.1 | 4bw7.1 | 4bw7.2 | 4bw7.3 | 4bw8.1 | 4bw8.2 | 4byf.1 | 4byf.2 | 4dck.1 | 4dck.2 more...less...4g27.1 | 4g28.1 | 4j9y.1 | 4j9z.1 | 4jpz.1 | 4jpz.2 | 4jq0.1 | 4l79.1 | 4ovn.1 | 4ovn.2 | 4ovn.3 | 4ovn.4 | 4ovn.5 | 4q5u.1 | 4umo.1 | 4v0c.1 | 4zlk.1 | 5j03.1 | 5jqa.1 | 5k7l.1 | 5k7l.2 | 5k7l.3 | 5k8q.1 | 5nin.1 | 5nin.2 | 5v02.1 | 5v03.1 | 5v7x.1 | 5vms.1 | 5vms.2 | 5vms.3 | 6b8l.1 | 6b8l.2 | 6b8l.3 | 6b8l.4 | 6b8m.1 | 6b8m.2 | 6b8m.3 | 6b8m.4 | 6b8n.1 | 6b8n.2 | 6b8n.3 | 6b8n.4 | 6b8p.1 | 6b8p.2 | 6b8p.3 | 6b8p.4 | 6b8q.1 | 6b8q.2 | 6b8q.3 | 6b8q.4 | 6cnm.1 | 6cno.1 | 6dmw.1 | 6e2f.1 | 6e2g.1 | 6feg.1 | 6feh.1 | 6ji8.1 | 6jiu.1 | 6jiy.1 | 6jrs.1 | 6jv2.1 | 6k4k.1 | 6k4k.2 | 6k4l.1 | 6k4l.2 | 6k4r.1 | 6k4r.2 | 6mba.1 | 6mc9.1 | 6mud.1 | 6n5w.1 | 6paw.1 | 6paw.2 | 6paw.3 | 6paw.4 | 6pbx.1 | 6pby.1 | 6s5t.1 | 6sz5.1 | 6uzz.1 | 6v00.1 | 6v01.1 | 6xxf.1 | 6y4o.1 | 7b1g.1 | 7bf1.1 | 7bf2.1 | 7byl.1 | 7bym.1 | 7byn.1 | 7cr3.1 | 7cr4.1 | 7cr7.1 | 7kl5.1 | 7sx3.1 | 7sx4.1 | 7tci.1 | 7tcp.1 | 7u9t.1 | 7ua3.1 | 7ua4.1 | 7vnp.1 | 7vnq.1 | 7vnr.1 | 7wji.1 | 7wr4.1 | 7wr5.1 | 7xn4.1 | 7xn5.1 | 7xn6.1 | 8ahs.1 | 8bx7.1 | 8dgh.1 | 8dgk.1 | 8ijk.1 | 8j07.736 | 8jfk.1 | 8sik.1 | 8sim.1 | 8sin.1 | 8uxl.1 | 8uxm.1 | 8w41.1 | 8w4u.1 | 8x43.1 | 8xya.1 | 8xyb.1 | 9cui.1 | 9cuk.1