- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-4-4-mer
- Ligands
- 20 x CA: CALCIUM ION(Non-covalent)
CA.1: 7 residues within 4Å:- Chain A: D.21, D.23, G.24, D.25, G.26, T.27, E.32
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.21, A:D.23, A:D.23, A:D.25, A:T.27
CA.2: 6 residues within 4Å:- Chain A: D.57, D.59, G.60, N.61, T.63, E.68
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.57, A:D.59, A:E.68, A:E.68
CA.3: 8 residues within 4Å:- Chain A: F.93, D.94, K.95, D.96, Y.100, I.101, S.102, E.105
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.94, A:D.96, A:E.105
CA.4: 6 residues within 4Å:- Chain A: D.130, D.134, Q.136, V.137, N.138, E.141
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.130, A:D.130, A:D.134, A:Q.136
CA.7: 3 residues within 4Å:- Chain B: E.3848, E.3922, T.4931
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.3848, B:E.3848, B:E.3922, B:T.4931
CA.9: 7 residues within 4Å:- Chain G: D.21, D.23, G.24, D.25, G.26, T.27, E.32
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.21, G:D.23, G:D.23, G:D.25, G:T.27
CA.10: 6 residues within 4Å:- Chain G: D.57, D.59, G.60, N.61, T.63, E.68
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:D.57, G:D.59, G:E.68, G:E.68
CA.11: 8 residues within 4Å:- Chain G: F.93, D.94, K.95, D.96, Y.100, I.101, S.102, E.105
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:D.94, G:D.96, G:E.105
CA.12: 6 residues within 4Å:- Chain G: D.130, D.134, Q.136, V.137, N.138, E.141
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:D.130, G:D.130, G:D.134, G:Q.136
CA.13: 7 residues within 4Å:- Chain H: D.21, D.23, G.24, D.25, G.26, T.27, E.32
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.21, H:D.23, H:D.23, H:D.25, H:T.27
CA.14: 6 residues within 4Å:- Chain H: D.57, D.59, G.60, N.61, T.63, E.68
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:D.57, H:D.59, H:E.68, H:E.68
CA.15: 8 residues within 4Å:- Chain H: F.93, D.94, K.95, D.96, Y.100, I.101, S.102, E.105
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:D.94, H:D.96, H:E.105
CA.16: 6 residues within 4Å:- Chain H: D.130, D.134, Q.136, V.137, N.138, E.141
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:D.130, H:D.130, H:D.134, H:Q.136
CA.17: 7 residues within 4Å:- Chain I: D.21, D.23, G.24, D.25, G.26, T.27, E.32
5 PLIP interactions:5 interactions with chain I- Metal complexes: I:D.21, I:D.23, I:D.23, I:D.25, I:T.27
CA.18: 6 residues within 4Å:- Chain I: D.57, D.59, G.60, N.61, T.63, E.68
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:D.57, I:D.59, I:E.68, I:E.68
CA.19: 8 residues within 4Å:- Chain I: F.93, D.94, K.95, D.96, Y.100, I.101, S.102, E.105
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:D.94, I:D.96, I:E.105
CA.20: 6 residues within 4Å:- Chain I: D.130, D.134, Q.136, V.137, N.138, E.141
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:D.130, I:D.130, I:D.134, I:Q.136
CA.23: 3 residues within 4Å:- Chain J: E.3848, E.3922, T.4931
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:E.3848, J:E.3848, J:E.3922, J:T.4931
CA.27: 3 residues within 4Å:- Chain K: E.3848, E.3922, T.4931
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:E.3848, K:E.3848, K:E.3922, K:T.4931
CA.31: 3 residues within 4Å:- Chain L: E.3848, E.3922, T.4931
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:E.3848, L:E.3848, L:E.3922, L:T.4931
- 4 x ZN: ZINC ION(Non-covalent)
ZN.5: 4 residues within 4Å:- Chain B: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.4888, B:C.4891, B:H.4908, B:H.4913
ZN.21: 4 residues within 4Å:- Chain J: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:C.4888, J:C.4891, J:H.4908, J:H.4913
ZN.25: 4 residues within 4Å:- Chain K: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:C.4888, K:C.4891, K:H.4908, K:H.4913
ZN.29: 4 residues within 4Å:- Chain L: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.4888, L:C.4891, L:H.4908, L:H.4913
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.6: 13 residues within 4Å:- Chain B: K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.4885, B:F.4889, B:I.4890, B:T.4909, B:T.4909, B:N.4914, B:L.4915
- Salt bridges: B:K.4169, B:R.4170
ATP.8: 2 residues within 4Å:- Chain B: H.915, R.1031
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.1031
ATP.22: 13 residues within 4Å:- Chain J: K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
9 PLIP interactions:9 interactions with chain J- Hydrogen bonds: J:E.4885, J:F.4889, J:I.4890, J:T.4909, J:T.4909, J:N.4914, J:L.4915
- Salt bridges: J:K.4169, J:R.4170
ATP.24: 2 residues within 4Å:- Chain J: H.915, R.1031
1 PLIP interactions:1 interactions with chain J- Salt bridges: J:R.1031
ATP.26: 13 residues within 4Å:- Chain K: K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
9 PLIP interactions:9 interactions with chain K- Hydrogen bonds: K:E.4885, K:F.4889, K:I.4890, K:T.4909, K:T.4909, K:N.4914, K:L.4915
- Salt bridges: K:K.4169, K:R.4170
ATP.28: 2 residues within 4Å:- Chain K: H.915, R.1031
1 PLIP interactions:1 interactions with chain K- Salt bridges: K:R.1031
ATP.30: 13 residues within 4Å:- Chain L: K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
9 PLIP interactions:9 interactions with chain L- Hydrogen bonds: L:E.4885, L:F.4889, L:I.4890, L:T.4909, L:T.4909, L:N.4914, L:L.4915
- Salt bridges: L:K.4169, L:R.4170
ATP.32: 2 residues within 4Å:- Chain L: H.915, R.1031
1 PLIP interactions:1 interactions with chain L- Salt bridges: L:R.1031
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miotto, M.C. et al., Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders. Nat Commun (2024)
- Release Date
- 2023-11-22
- Peptides
- Calmodulin-1: AGHI
Ryanodine receptor 2: BJKL
Peptidyl-prolyl cis-trans isomerase FKBP1B: CDEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IG
JH
LI
KB
AJ
BK
CL
DC
ED
FE
GF
H
SMTL ID : 8uxm.1
Structure of PKA phosphorylated human RyR2-R420W in the open state in the presence of calcium and calmodulin
Calmodulin-1
Toggle Identical (AGHI)Ryanodine receptor 2
Toggle Identical (BJKL)Peptidyl-prolyl cis-trans isomerase FKBP1B
Toggle Identical (CDEF)Related Entries With Identical Sequence
1iq5.1 | 1lvc.1 | 1lvc.2 | 1lvc.3 | 1wrz.1 | 2bki.1 | 2r28.1 | 2v01.1 | 2v02.1 | 2w73.1 | 2w73.2 | 2y4v.1 | 3hr4.1 | 3hr4.2 | 3hr4.3 | 3hr4.4 | 3j41.1 | 3oxq.1 | 3oxq.2 | 3sjq.1 | 3sui.1 | 4bw7.1 | 4bw7.2 | 4bw7.3 | 4bw8.1 | 4bw8.2 | 4byf.1 | 4byf.2 | 4c02.1 | 4dck.1 more...less...4dck.2 | 4g27.1 | 4g28.1 | 4j9y.1 | 4j9z.1 | 4jpz.1 | 4jpz.2 | 4jq0.1 | 4l79.1 | 4ovn.1 | 4ovn.2 | 4ovn.3 | 4ovn.4 | 4ovn.5 | 4q5u.1 | 4umo.1 | 4v0c.1 | 4zlk.1 | 5j03.1 | 5jqa.1 | 5k7l.1 | 5k7l.2 | 5k7l.3 | 5k8q.1 | 5nin.1 | 5nin.2 | 5t15.1 | 5t9m.1 | 5t9n.1 | 5t9r.1 | 5t9s.1 | 5t9v.1 | 5ta3.1 | 5tal.1 | 5tam.1 | 5tan.1 | 5tap.1 | 5taq.1 | 5tas.1 | 5tat.1 | 5tau.1 | 5tav.1 | 5taw.1 | 5tax.1 | 5tay.1 | 5taz.1 | 5tb0.1 | 5tb1.1 | 5tb2.1 | 5tb3.1 | 5tb4.1 | 5v02.1 | 5v03.1 | 5v7x.1 | 5vms.1 | 5vms.2 | 5vms.3 | 6b8l.1 | 6b8l.2 | 6b8l.3 | 6b8l.4 | 6b8m.1 | 6b8m.2 | 6b8m.3 | 6b8m.4 | 6b8n.1 | 6b8n.2 | 6b8n.3 | 6b8n.4 | 6b8p.1 | 6b8p.2 | 6b8p.3 | 6b8p.4 | 6b8q.1 | 6b8q.2 | 6b8q.3 | 6b8q.4 | 6cnm.1 | 6cnn.1 | 6cno.1 | 6dmw.1 | 6e2f.1 | 6e2g.1 | 6feg.1 | 6feh.1 | 6jgz.1 | 6jh6.1 | 6jhn.1 | 6ji0.1 | 6ji8.1 | 6jii.1 | 6jiu.1 | 6jiy.1 | 6jrr.1 | 6jrs.1 | 6jv2.1 | 6k4k.1 | 6k4k.2 | 6k4l.1 | 6k4l.2 | 6k4r.1 | 6k4r.2 | 6mba.1 | 6mc9.1 | 6mud.1 | 6n5w.1 | 6paw.1 | 6paw.2 | 6paw.3 | 6paw.4 | 6pbx.1 | 6pby.1 | 6pv6.1 | 6s5t.1 | 6sz5.1 | 6uzz.1 | 6v00.1 | 6v01.1 | 6xxf.1 | 6y4o.1 | 7b1g.1 | 7bf1.1 | 7bf2.1 | 7byl.1 | 7bym.1 | 7byn.1 | 7cr3.1 | 7cr4.1 | 7cr7.1 | 7jmf.1 | 7kl5.1 | 7m6a.1 | 7m6l.1 | 7sx3.1 | 7sx4.1 | 7tci.1 | 7tcp.1 | 7u9q.1 | 7u9r.1 | 7u9t.1 | 7u9x.1 | 7u9z.1 | 7ua1.1 | 7ua3.1 | 7ua4.1 | 7ua5.1 | 7ua9.1 | 7vnp.1 | 7vnq.1 | 7vnr.1 | 7wji.1 | 7wr4.1 | 7wr5.1 | 7xn4.1 | 7xn5.1 | 7xn6.1 | 8ahs.1 | 8bx7.1 | 8dgh.1 | 8dgk.1 | 8ijk.1 | 8j07.736 | 8jfk.1 | 8sik.1 | 8sim.1 | 8sin.1 | 8uq2.1 | 8uq3.1 | 8uq4.1 | 8uxc.1 | 8uxe.1 | 8uxf.1 | 8uxg.1 | 8uxh.1 | 8uxi.1 | 8uxl.1 | 8w41.1 | 8w4u.1 | 8x43.1 | 8xya.1 | 8xyb.1 | 9cui.1 | 9cuk.1