SMTL ID : 6cpm.2 (1 other biounit)

Structure of the USP15 deubiquitinase domain in complex with a third-generation inhibitory Ubv

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: T.188, D.190 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain B: Q.35, D.36 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.36, H2O.10

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.179, C.182, C.230, C.233 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.179, A:C.182, A:C.230, A:C.233

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: K.139, E.152, N.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.139, A:K.139, A:N.156

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: F.173, Y.194, L.195, T.196, F.216 Chain B: T.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.194, A:T.196, A:T.196 GOL.5: 2 residues within 4Å: Chain A: E.15, V.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.15 Water bridges: A:V.324, A:V.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teyra, J. et al., Structural and Functional Characterization of Ubiquitin Variant Inhibitors of USP15. Structure (2019)

Release Date

2019-01-23

Peptides

Ubiquitin carboxyl-terminal hydrolase 15: A
Ubiquitin variant 15.1d: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Ubiquitin carboxyl-terminal hydrolase 15

Ubiquitin variant 15.1d

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