SMTL ID : 6ml1.2 (2 other biounits)

Structure of the USP15 deubiquitinase domain in complex with an affinity-matured inhibitory Ubv

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.181, E.235, Q.237 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.181, A:E.235

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.179, C.182, C.230, C.233 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.179, A:C.182, A:C.230, A:C.233

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: D.281, G.284, C.285, R.286, S.348 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.348, A:S.348 Water bridges: A:G.284

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: N.278 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: K.208, L.209, K.210, D.274, P.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.209, A:K.210, A:D.274 NA.6: 4 residues within 4Å: Chain A: P.198, L.199, K.257, S.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.199, A:S.260, A:S.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teyra, J. et al., Structural and Functional Characterization of Ubiquitin Variant Inhibitors of USP15. Structure (2019)

Release Date

2019-01-23

Peptides

Ubiquitin carboxyl-terminal hydrolase 15,Ubiquitin carboxyl-terminal hydrolase 15,Ubiquitin carboxyl-terminal hydrolase 15: A
Ubiquitin variant 15.1a: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Ubiquitin carboxyl-terminal hydrolase 15,Ubiquitin carboxyl-terminal hydrolase 15,Ubiquitin carboxyl-terminal hydrolase 15

Ubiquitin variant 15.1a

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