SMTL ID : 6cq1.1

BCL6 BTB domain in complex with 15a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x F8J: 2-{6-({[2-(1H-indol-3-yl)ethyl]carbamothioyl}amino)-3-[(4-methylpiperazin-1-yl)methyl]-1H-indol-1-yl}-N-(propan-2-yl)acetamide(Non-covalent)

F8J.1: 12 residues within 4Å: Chain A: M.53, A.54, C.55, S.56, G.57, Y.60, Q.115, E.117 Chain B: D.19, N.23, L.27, R.30 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.60, A:Y.60 Hydrogen bonds: A:M.53, A:C.55, B:N.23 Salt bridges: A:E.117, A:E.117 F8J.2: 15 residues within 4Å: Chain A: H.16, D.19, V.20, N.23, R.26, L.27, R.30 Chain B: M.53, A.54, C.55, S.56, G.57, Y.60, Q.115, E.117 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.60, B:Y.60, A:V.20 Hydrogen bonds: B:M.53, B:C.55 Salt bridges: B:E.117, B:E.117 Water bridges: A:N.23, A:N.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, H. et al., Identification of Thiourea-Based Inhibitors of the B-Cell Lymphoma 6 BTB Domain via NMR-Based Fragment Screening and Computer-Aided Drug Design. J.Med.Chem. (2018)

Release Date

2019-03-20

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B-cell lymphoma 6 protein

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