SMTL ID : 6ct5.1 (1 other biounit)

PptT PAP(CoA) 8918 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 17 residues within 4Å: Chain A: R.48, R.56, K.75, K.78, G.79, E.80, P.81, L.91, T.92, H.93, D.114, Y.160, K.161, F.164 Ligands: FD7.2, MG.4, MG.5 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.78, A:T.92, A:H.93, A:Y.160, A:K.161 Water bridges: A:K.75, A:H.93, A:H.93, A:A.115 Salt bridges: A:R.48, A:R.56, A:K.75, A:H.93, A:H.93, A:K.161

2 x FD7: N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea(Non-covalent)

FD7.2: 9 residues within 4Å: Chain A: K.156, E.157, Y.160, W.170, L.171, G.172, F.173 Ligands: COA.1, FD7.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.156, A:Y.160, A:L.171 Hydrogen bonds: A:K.156, A:E.157 Salt bridges: A:E.157 pi-Cation interactions: A:F.173 FD7.3: 7 residues within 4Å: Chain A: V.125, A.128, I.129, F.153, F.173 Ligands: FD7.2, DMS.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.125, A:A.128, A:F.153, A:F.173

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.4: 4 residues within 4Å: Chain A: T.92, D.114, E.116 Ligands: COA.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.114, H2O.1, H2O.1, H2O.3, H2O.3 MG.5: 2 residues within 4Å: Chain A: H.93 Ligands: COA.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.93, A:H.93, H2O.2, H2O.5, H2O.5 MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: L.31, T.32, H.57, R.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.32, A:R.60, A:R.60 GOL.8: 3 residues within 4Å: Chain A: E.17, D.18, L.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.18, A:L.19 GOL.9: 4 residues within 4Å: Chain A: R.140, T.141, P.143, T.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:T.182, A:T.182

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.10: 4 residues within 4Å: Chain A: E.116, P.122, F.153 Ligands: FD7.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.150 Salt bridges: A:E.116 DMS.11: 5 residues within 4Å: Chain A: V.120, L.146, H.147, W.148, D.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.147 Salt bridges: A:D.149 DMS.12: 5 residues within 4Å: Chain A: W.83, P.84, D.85, G.86, M.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.85, A:G.86 Salt bridges: A:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballinger, E. et al., Opposing reactions in coenzyme A metabolism sensitizeMycobacterium tuberculosisto enzyme inhibition. Science (2019)

Release Date

2019-02-06

Peptides

4'-phosphopantetheinyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4'-phosphopantetheinyl transferase

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