SMTL ID : 7n8l.1 (1 other biounit)

PptT PAP(CoA) 9016 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 18 residues within 4Å: Chain A: R.48, F.52, R.56, K.75, K.78, G.79, E.80, P.81, L.91, T.92, H.93, D.114, Y.160, K.161, F.164 Ligands: 10I.2, MG.3, MG.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.78, A:T.92, A:H.93, A:K.161 Water bridges: A:A.115, A:E.157, A:E.157 Salt bridges: A:R.48, A:R.56, A:K.75, A:H.93, A:H.93, A:K.161

1 x 10I: N-(2,6-diethylphenyl)-N'-(N-propylcarbamimidoyl)urea(Non-covalent)

10I.2: 10 residues within 4Å: Chain A: K.156, E.157, Y.160, K.161, W.170, L.171, G.172, F.173, A.176 Ligands: COA.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.156, A:Y.160, A:L.171, A:A.176 Hydrogen bonds: A:K.156, A:E.157, A:L.171 Salt bridges: A:E.157 pi-Cation interactions: A:F.173

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.92, D.114, A.115, E.116 Ligands: COA.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.114, H2O.1, H2O.1, H2O.1, H2O.1 MG.4: 2 residues within 4Å: Chain A: H.93 Ligands: COA.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.93, A:H.93, H2O.1, H2O.1, H2O.3

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain A: H.118, D.119, G.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.118, A:G.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ottavi, S. et al., In Vitro and In Vivo Inhibition of the Mycobacterium tuberculosis Phosphopantetheinyl Transferase PptT by Amidinoureas. J.Med.Chem. (2022)

Release Date

2022-02-02

Peptides

4'-phosphopantetheinyl transferase PptT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4'-phosphopantetheinyl transferase PptT

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