SMTL ID : 6cu3.1 (3 other biounits)

Crystal structure of a protein arginine N-methyltransferase from Naegleria fowleri

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: R.90, K.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.90, A:R.90 EDO.2: 5 residues within 4Å: Chain A: K.53, D.123, P.153, G.155, Y.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.153 EDO.3: 3 residues within 4Å: Chain A: T.163, K.217, E.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.217 EDO.4: 6 residues within 4Å: Chain A: D.171, Y.174, D.204, F.205, Q.210, Y.286 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.204, A:D.204, A:Q.210 Water bridges: A:Y.174 EDO.5: 4 residues within 4Å: Chain A: T.214, T.241, Q.243, N.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.243, A:N.296 EDO.6: 2 residues within 4Å: Chain B: R.90, K.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.90, B:R.90 EDO.7: 5 residues within 4Å: Chain B: K.53, D.123, P.153, G.155, Y.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.153 EDO.8: 3 residues within 4Å: Chain B: T.163, K.217, E.220 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.217 EDO.9: 6 residues within 4Å: Chain B: D.171, Y.174, D.204, F.205, Q.210, Y.286 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.204, B:D.204, B:Q.210 Water bridges: B:Y.174 EDO.10: 4 residues within 4Å: Chain B: T.214, T.241, Q.243, N.296 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.243, B:N.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a protein arginine N-methyltransferase from Naegleria fowleri. To Be Published

Release Date

2018-04-04

Peptides

protein arginine N-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

protein arginine N-methyltransferase

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