SMTL ID : 6cu3.2 (3 other biounits)

Crystal structure of a protein arginine N-methyltransferase from Naegleria fowleri

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: L.30, K.31, D.32, R.35, T.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.32, A:R.35 EDO.2: 2 residues within 4Å: Chain A: R.90, K.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.90, A:R.90 EDO.3: 7 residues within 4Å: Chain A: K.53, D.123, R.152, P.153, G.154, G.155, Y.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.53, A:K.53, A:D.123, A:P.153 EDO.4: 5 residues within 4Å: Chain A: M.130, G.131, Y.132, H.279, W.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.279 EDO.5: 5 residues within 4Å: Chain A: L.231, I.234, S.306, Q.307, L.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.232, A:Q.307 EDO.6: 2 residues within 4Å: Chain B: R.90, K.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.90, B:R.90 EDO.7: 5 residues within 4Å: Chain B: M.130, G.131, Y.132, H.279, W.280 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.280 EDO.8: 5 residues within 4Å: Chain B: D.183, N.184, G.187, F.188, N.189 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.183 EDO.9: 5 residues within 4Å: Chain A: H.26 Chain B: E.200, V.203, R.336 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.200 EDO.10: 4 residues within 4Å: Chain B: Y.132, V.203, K.281 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.281, B:K.281 EDO.11: 5 residues within 4Å: Chain B: L.231, I.234, S.306, Q.307, L.315 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.307 EDO.12: 3 residues within 4Å: Chain B: L.291, P.292, V.323 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.292 Water bridges: B:V.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a protein arginine N-methyltransferase from Naegleria fowleri. To Be Published

Release Date

2018-04-04

Peptides

protein arginine N-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

protein arginine N-methyltransferase

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