SMTL ID : 6cwi.1 (1 other biounit)

Crystal structure of SpaA-SLH in complex with 4,6-Pyr-beta-D-ManNAcOMe (C2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

2 x 6LA: methyl 2-(acetylamino)-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside(Non-covalent)

6LA.1: 11 residues within 4Å: Chain A: R.41, M.87, Q.88, G.89, K.90, L.92, E.107, K.110, T.111, W.131 Ligands: SO4.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.92, A:E.107, A:K.110, A:T.111 Hydrogen bonds: A:R.41, A:R.41, A:Q.88, A:G.89, A:G.89, A:K.110 Salt bridges: A:R.41, A:K.110 6LA.2: 10 residues within 4Å: Chain A: F.24, S.25, G.26, Y.27, P.28, M.39, E.43, K.46, V.47, R.157 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.43, A:V.47 Hydrogen bonds: A:S.25, A:S.25, A:G.26, A:G.26, A:K.46, A:R.157 Water bridges: A:V.23 Salt bridges: A:R.157

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: Q.88, K.110, W.131, Y.135 Ligands: 6LA.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.88, A:Q.88, A:Y.135, A:Y.135 Salt bridges: A:K.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blackler, R.J. et al., Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei. Nat Commun (2018)

Release Date

2018-08-15

Peptides

Surface (S-) layer glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Surface (S-) layer glycoprotein

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