SMTL ID : 7sv4.1

Crystal structure of SpaA-SLH in complex with 4,6-Pyr-beta-D-ManNAc-(1->4)-beta-D-GlcNAc-(1->3)-4,6-Pyr-beta-D-ManNAcOMe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: D.123, Q.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.125

1 x D4I: methyl 2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl-(1->4)-2-acetamido-2-deoxy-beta-D-glucopyranosyl-(1->3)-2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside(Non-covalent)

D4I.2: 11 residues within 4Å: Chain A: R.41, M.87, Q.88, G.89, K.90, L.92, E.107, K.110, T.111, T.129, W.131 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.92, A:E.107, A:K.110, A:T.111 Hydrogen bonds: A:R.41, A:R.41, A:Q.88, A:Q.88, A:G.89, A:G.89, A:K.110, A:K.110 Water bridges: A:K.90, A:E.107 Salt bridges: A:R.41, A:K.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Legg, M.S.G. et al., The S-layer homology domains of Paenibacillus alvei surface protein SpaA bind to cell wall polysaccharide through the terminal monosaccharide residue. J.Biol.Chem. (2022)

Release Date

2022-03-09

Peptides

Surface (S-) layer glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Surface (S-) layer glycoprotein

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