SMTL ID : 6cwn.1

Crystal structure of SpaA-SLH/G109A in complex with 4,6-Pyr-beta-D-ManNAcOMe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x 6LA: methyl 2-(acetylamino)-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside(Non-covalent)

6LA.1: 10 residues within 4Å: Chain A: F.24, S.25, G.26, Y.27, P.28, E.43, K.46, V.47, W.73, R.157 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.43, A:V.47 Hydrogen bonds: A:S.25, A:S.25, A:G.26, A:G.26, A:K.46, A:R.157, A:R.157 Water bridges: A:E.43 Salt bridges: A:K.46, A:R.157

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 3 residues within 4Å: Chain A: F.52, T.114, A.115 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.52 Water bridges: A:E.84, A:A.115 MPD.3: 5 residues within 4Å: Chain A: A.42, N.72, W.73, F.99, N.100 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.42, A:F.99, A:F.99 Hydrogen bonds: A:N.100 Water bridges: A:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blackler, R.J. et al., Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei. Nat Commun (2018)

Release Date

2018-08-15

Peptides

Surface (S-) layer glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Surface (S-) layer glycoprotein

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