SMTL ID : 7sv5.2 (1 other biounit)

Crystal structure of SpaA-SLH/G109A in complex with 4,6-Pyr-beta-D-ManNAc-(1->4)-beta-D-GlcNAcOMe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: T.40, A.42, E.43, N.72, W.73, F.99, N.100 Ligands: D2Y.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.40, A:N.72, A:N.72, A:W.73

1 x D2Y: methyl 2-acetamido-4-O-{2-acetamido-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranosyl}-2-deoxy-beta-D-glucopyranoside(Non-covalent)

D2Y.2: 11 residues within 4Å: Chain A: F.24, S.25, G.26, Y.27, P.28, E.43, K.46, V.47, W.73, R.157 Ligands: GOL.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.43, A:V.47 Hydrogen bonds: A:S.25, A:S.25, A:G.26, A:G.26, A:K.46, A:R.157, A:R.157 Water bridges: A:E.43 Salt bridges: A:K.46, A:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Legg, M.S.G. et al., The S-layer homology domains of Paenibacillus alvei surface protein SpaA bind to cell wall polysaccharide through the terminal monosaccharide residue. J.Biol.Chem. (2022)

Release Date

2022-03-09

Peptides

Surface (S-) layer glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Surface (S-) layer glycoprotein

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