SMTL ID : 6d0x.1

Crystal structure of chimeric H.2140 / K.1210 Fab in complex with circumsporozoite protein NANP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.8, G.9, G.10, V.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8, A:V.11 Water bridges: A:V.11 GOL.2: 4 residues within 4Å: Chain B: L.11, R.18, V.19, T.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.20, B:T.20, B:T.20 GOL.3: 3 residues within 4Å: Chain B: P.80, F.83, I.105 1 PLIP interactions: 1 interactions with chain B Water bridges: B:F.83

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain B: S.30, S.67, G.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.67 Water bridges: B:S.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imkeller, K. et al., Antihomotypic affinity maturation improves human B cell responses against a repetitive epitope. Science (2018)

Release Date

2018-06-13

Peptides

2140 Antibody, heavy chain: A
1210 Antibody, light chain: B
NANP3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

2140 Antibody, heavy chain

1210 Antibody, light chain

NANP3

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