SMTL ID : 6d01.2 (1 other biounit)

Crystal structure of 1210 Fab in complex with circumsporozoite protein NANP5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-1-mer

Ligands

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.54, N.74 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: S.122, L.180, G.184, Y.186 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain A: R.100 Ligand excluded by PLIP EDO.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain B: A.25, S.26 Ligands: EDO.12 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain B: S.67, T.69 Ligand excluded by PLIP EDO.8: 8 residues within 4Å: Chain B: Q.37, K.45, L.47, V.58, P.59, F.62, D.81, D.82 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain B: Q.27, S.28, N.92 Chain D: K.50 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: K.43 Chain B: Q.99 Ligand excluded by PLIP EDO.11: 1 residues within 4Å: Chain B: K.42 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain B: S.26 Ligands: EDO.6 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain C: Y.32, D.101 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain D: P.8, S.9, T.10 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain D: R.18, S.63, S.65 Ligands: EDO.19 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain D: Q.37, K.45, L.47, P.59, D.81, D.82 Ligand excluded by PLIP EDO.19: 1 residues within 4Å: Ligands: EDO.17 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain A: Y.105 Chain C: W.52 Chain E: N.7 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 1 residues within 4Å: Chain A: E.158 No protein-ligand interaction detected (PLIP) PEG.13: 4 residues within 4Å: Chain A: G.42 Chain B: Q.38, T.85, Y.87 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.85, B:Y.87 PEG.14: 4 residues within 4Å: Chain B: K.106, R.107, D.169, S.170 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imkeller, K. et al., Antihomotypic affinity maturation improves human B cell responses against a repetitive epitope. Science (2018)

Release Date

2018-06-13

Peptides

1210 Antibody, heavy chain: AC
1210 Antibody, Light chain: BD
NANP5: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
G

B
F

D
H

E
J

1210 Antibody, heavy chain

1210 Antibody, Light chain

NANP5

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