SMTL ID : 6d20.1

Crystal structure of Tyrosine-protein kinase receptor in complex with 5-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4(3H)-one and 5-{[2,4-dichloro-5-(pyridin-2-yl)benzene-1-carbonyl]amino}-N-(2-hydroxy-2-methylpropyl)-1-phenyl-1H-pyrazole-3-carboxamide Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x FQD: 5-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

FQD.1: 5 residues within 4Å: Chain A: L.36, K.37, W.38, E.39, F.49 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:E.39 Water bridges: A:W.38 pi-Stacking: A:W.38, A:W.38

1 x FQG: 5-{[2,4-dichloro-5-(pyridin-2-yl)benzene-1-carbonyl]amino}-N-(2-hydroxy-2-methylpropyl)-1-phenyl-1H-pyrazole-3-carboxamide(Non-covalent)

FQG.2: 22 residues within 4Å: Chain A: K.6, G.7, S.8, G.9, L.10, K.68, E.84, L.88, L.91, I.96, V.97, M.111, F.113, L.165, F.170, H.172, I.190, G.191, D.192, F.193, G.194, R.197 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.10, A:L.10, A:L.88, A:L.88, A:I.96, A:V.97, A:F.113, A:F.170 Hydrogen bonds: A:G.7, A:G.9, A:L.10, A:D.192, A:D.192, A:R.197 Water bridges: A:K.6, A:S.8, A:S.8, A:R.197 pi-Cation interactions: A:K.68 Halogen bonds: A:H.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagal, S.K. et al., Discovery of Allosteric, Potent, Subtype Selective, and Peripherally Restricted TrkA Kinase Inhibitors. J. Med. Chem. (2019)

Release Date

2018-05-02

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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