SMTL ID : 6dki.1

Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 19.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x 22L: 5-phenylthieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

22L.1: 5 residues within 4Å: Chain A: L.36, K.37, W.38, E.39, F.49 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:E.39 Water bridges: A:W.38 pi-Stacking: A:W.38, A:W.38

1 x GOD: 6-amino-5-{[(3S)-4,4-difluoro-1-{[4-(trifluoromethoxy)phenyl]acetyl}pyrrolidin-3-yl]oxy}-N-methylpyridine-3-carboxamide(Non-covalent)

GOD.2: 21 residues within 4Å: Chain A: L.40, V.48, A.66, K.68, L.88, L.91, I.96, V.97, F.113, E.114, Y.115, M.116, G.119, L.165, F.170, H.172, L.181, I.190, G.191, D.192, F.193 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.88, A:V.97, A:F.113, A:L.181, A:D.192, A:F.193 Hydrogen bonds: A:E.114, A:M.116, A:D.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagal, S.K. et al., Discovery of Potent, Selective, and Peripherally Restricted Pan-Trk Kinase Inhibitors for the Treatment of Pain. J. Med. Chem. (2018)

Release Date

2018-07-11

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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