SMTL ID : 6d46.1

Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 3 residues within 4Å: Chain A: R.88, K.89 Chain B: E.280 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.280, B:E.280, A:K.89 PG4.2: 10 residues within 4Å: Chain A: T.56, N.57, M.58, D.59, L.60, Y.61, D.128, K.233, L.245, K.247 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.128, A:K.233, A:K.247, A:K.247 Water bridges: A:Y.39, A:Y.39, A:T.56 PG4.4: 3 residues within 4Å: Chain A: E.280 Chain B: R.88, K.89 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.89, A:E.280, A:E.280 PG4.5: 10 residues within 4Å: Chain B: T.56, N.57, M.58, D.59, L.60, Y.61, D.128, K.233, L.245, K.247 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.233, B:K.247, B:K.247

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: S.72, E.73 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: S.72, E.73 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington. To Be Published

Release Date

2018-05-02

Peptides

Beta sliding clamp: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta sliding clamp

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