SMTL ID : 6djk.1

Structure of DNA polymerase III subunit beta from Rickettsia typhi in complex with a natural product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.57, M.58, D.59, L.60, Y.61, L.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.58, A:L.245 EDO.2: 1 residues within 4Å: Chain A: I.260 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain C: N.57, M.58, D.59, L.60, Y.61, L.245 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.56, C:M.58, C:L.245 EDO.5: 1 residues within 4Å: Chain C: I.260 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain A: R.88, K.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.88, A:K.89 PEG.6: 2 residues within 4Å: Chain C: R.88, K.89 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.88, C:K.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Structure of DNA polymerase III subunit beta from Rickettsia typhi in complex with a natural product. to be published

Release Date

2019-05-29

Peptides

Beta sliding clamp: AC
ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Beta sliding clamp

ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY

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