SMTL ID : 6d6c.5 (5 other biounits)

The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

2 x FYD: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 2-methoxybenzoate(Non-covalent)

FYD.1: 23 residues within 4Å: Chain A: L.36, G.38, L.39, L.40, Y.47, A.50, Y.56, W.60, R.61, Y.64, D.73, T.75, V.76, W.88, Y.93, F.101, A.105, L.110, T.115, L.125, G.126, A.127, S.129 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.36, A:T.75, A:V.76, A:W.88, A:A.127 Hydrogen bonds: A:D.73, A:S.129 pi-Stacking: A:Y.47, A:Y.64, A:W.88, A:F.101 Halogen bonds: A:Y.47 FYD.2: 24 residues within 4Å: Chain B: L.36, G.38, L.39, L.40, Y.47, A.50, I.52, Y.56, W.60, R.61, Y.64, D.73, T.75, V.76, C.79, W.88, Y.93, F.101, A.105, L.110, T.115, G.126, A.127, S.129 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.75, B:V.76, B:F.101, B:F.101, B:A.127 Hydrogen bonds: B:Y.56, B:D.73, B:S.129 pi-Stacking: B:Y.47, B:Y.64, B:W.88, B:W.88 Halogen bonds: B:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Reilly, M.C. et al., Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR. Cell Chem Biol (2018)

Release Date

2018-08-08

Peptides

Transcriptional activator protein LasR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
K

Transcriptional activator protein LasR

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