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SMTL ID : 6d6o.2
(1 other biounit)
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 17
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
homo-dimer
Ligands
2 x
FX7
:
2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl octanoate
(Non-covalent)
FX7.1:
22 residues within 4Å:
Chain A:
L.36
,
G.38
,
L.40
,
Y.47
,
I.52
,
Y.56
,
W.60
,
Y.64
,
D.73
,
T.75
,
V.76
,
T.80
,
W.88
,
Y.93
,
F.101
,
A.105
,
L.110
,
T.115
,
L.125
,
G.126
,
A.127
,
S.129
17
PLIP interactions
:
17 interactions with chain A
Hydrophobic interactions:
A:L.36
,
A:L.40
,
A:Y.47
,
A:T.75
,
A:V.76
,
A:T.80
,
A:F.101
,
A:A.105
,
A:L.125
,
A:L.125
,
A:A.127
Hydrogen bonds:
A:D.73
,
A:T.75
,
A:S.129
pi-Stacking:
A:Y.64
,
A:W.88
,
A:W.88
FX7.2:
23 residues within 4Å:
Chain B:
L.36
,
G.38
,
L.40
,
Y.47
,
I.52
,
Y.56
,
W.60
,
R.61
,
Y.64
,
D.73
,
T.75
,
V.76
,
T.80
,
W.88
,
Y.93
,
F.101
,
A.105
,
L.110
,
T.115
,
L.125
,
G.126
,
A.127
,
S.129
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:L.36
,
B:L.40
,
B:Y.47
,
B:Y.56
,
B:T.75
,
B:T.80
,
B:F.101
,
B:F.101
,
B:A.105
,
B:L.125
,
B:L.125
,
B:A.127
Hydrogen bonds:
B:Y.56
,
B:D.73
,
B:T.75
,
B:S.129
pi-Stacking:
B:Y.64
,
B:W.88
,
B:W.88
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
O'Reilly, M.C. et al., Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR. Cell Chem Biol (2018)
Release Date
2018-08-08
Peptides
Transcriptional activator protein LasR:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Transcriptional activator protein LasR
Toggle Identical (AB)
Related Entries With Identical Sequence
6d6a.1
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6d6a.2
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6d6a.3
|
6d6a.4
|
6d6b.1
|
6d6b.2
|
6d6b.3
|
6d6b.4
|
6d6c.1
|
6d6c.2
|
6d6c.3
|
6d6c.4
|
6d6c.5
|
6d6c.6
|
6d6l.1
|
6d6l.2
|
6d6m.1
|
6d6m.2
|
6d6n.1
|
6d6n.2
|
6d6o.1
|
6d6p.1
|
6d6p.2
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