SMTL ID : 6d94.1

Crystal structure of PPAR gamma in complex with Mediator of RNA polymerase II transcription subunit 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDK: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid(Non-covalent)

EDK.1: 21 residues within 4Å: Chain A: I.82, I.101, F.102, G.104, C.105, Q.106, S.109, H.143, I.146, Y.147, L.150, V.159, I.161, M.168, F.180, F.183, M.184, H.269, L.273, L.289, Y.293 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.82, A:F.102, A:Q.106, A:I.146, A:L.150, A:F.183, A:F.183, A:F.183, A:L.289 Hydrogen bonds: A:S.109, A:S.109, A:H.269, A:Y.293 Salt bridges: A:H.143, A:H.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemetchek, M.D. et al., A structural mechanism of nuclear receptor biased agonism. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2019-05-01

Peptides

Peroxisome proliferator-activated receptor gamma: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Mediator of RNA polymerase II transcription subunit 1

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