SMTL ID : 6ddi.1 (1 other biounit)

Crystal Structure of the human BRD2 BD1 bromodomain in complex with a Tetrahydroquinoline analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x G7V: 4-{[(2S,4R)-1-acetyl-2-methyl-6-(1H-pyrazol-3-yl)-1,2,3,4-tetrahydroquinolin-4-yl]amino}benzonitrile(Non-covalent)

G7V.1: 13 residues within 4Å: Chain A: W.35, P.36, F.37, V.41, K.45, L.46, L.48, Y.51, C.90, Y.93, N.94, I.100 Ligands: EDO.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.35, A:P.36, A:F.37, A:V.41, A:L.46, A:L.46, A:L.48, A:Y.51, A:Y.93, A:I.100 Hydrogen bonds: A:K.45, A:N.94 pi-Stacking: A:W.35 G7V.5: 12 residues within 4Å: Chain B: W.35, P.36, F.37, Q.39, V.41, L.46, L.48, Y.51, C.90, N.94, I.100 Ligands: EDO.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.35, B:P.36, B:F.37, B:V.41, B:L.46, B:L.48, B:Y.51 Hydrogen bonds: B:N.94 pi-Stacking: B:W.35

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: W.35, R.38 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.38, A:R.38 Salt bridges: A:R.38

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: D.98, D.99, I.100 Ligands: G7V.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.99, A:I.100 EDO.4: 3 residues within 4Å: Chain A: Q.32, W.35, M.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.32 EDO.7: 4 residues within 4Å: Chain B: D.98, D.99, I.100 Ligands: G7V.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.99, B:I.100

1 x 03S: methanesulfonic acid(Non-covalent)

03S.6: 2 residues within 4Å: Chain B: W.35, R.38 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.38 Salt bridges: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Slavish, P.J. et al., Bromodomain-Selective BET Inhibitors Are Potent Antitumor Agents against MYC-Driven Pediatric Cancer. Cancer Res. (2020)

Release Date

2019-11-13

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain-containing protein 2

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