SMTL ID : 6def.3 (3 other biounits)

Vps1 GTPase-BSE fusion complexed with GMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 29 residues within 4Å: Chain A: S.53, Q.54, S.55, S.56, G.57, K.58, S.59, S.60, P.72, R.73, G.74, Q.75, G.76, I.77, V.78, T.79, P.174, G.175, T.241, K.242, D.244, L.245, V.271, N.272, R.273, G.274, Q.275, I.278 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:Q.54, A:S.55, A:S.56, A:S.56, A:G.57, A:K.58, A:K.58, A:S.59, A:S.60, A:S.60, A:G.74, A:V.78, A:T.79, A:T.79, A:G.175, A:K.242, A:K.242, A:N.272, A:R.273 Water bridges: A:P.72, A:R.73, A:T.79, A:D.244, A:G.274 Salt bridges: A:D.244

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.59, V.78, T.79, D.172 Ligands: GCP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.59, A:T.79, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varlakhanova, N.V. et al., Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol. (2018)

Release Date

2018-08-22

Peptides

Vps1 GTPase-BSE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Vps1 GTPase-BSE

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