- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.2: 14 residues within 4Å:- Chain A: Q.54, S.55, K.58, S.59, G.76, I.77, V.78, T.79, L.173, P.174, G.175
- Ligands: GDP.1, MG.3, NA.4
No protein-ligand interaction detected (PLIP)ALF.6: 14 residues within 4Å:- Chain B: Q.54, S.55, K.58, S.59, G.76, I.77, V.78, T.79, L.173, P.174, G.175
- Ligands: GDP.5, MG.7, NA.8
No protein-ligand interaction detected (PLIP)- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: S.59, T.79, D.172
- Ligands: GDP.1, ALF.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.59, A:T.79, H2O.1, H2O.1
MG.7: 5 residues within 4Å:- Chain B: S.59, T.79, D.172
- Ligands: GDP.5, ALF.6
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.59, B:T.79, H2O.1
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.4: 9 residues within 4Å:- Chain A: Q.54, S.55, G.74, Q.75, G.76, I.77, V.78
- Ligands: GDP.1, ALF.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.55, A:S.55, A:G.76, A:V.78
NA.8: 9 residues within 4Å:- Chain B: Q.54, S.55, G.74, Q.75, G.76, I.77, V.78
- Ligands: GDP.5, ALF.6
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.55, B:Q.75, B:V.78
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varlakhanova, N.V. et al., Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol. (2018)
- Release Date
- 2018-08-22
- Peptides
- Vps1 GTPase-BSE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Varlakhanova, N.V. et al., Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol. (2018)
- Release Date
- 2018-08-22
- Peptides
- Vps1 GTPase-BSE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B