SMTL ID : 6diz.2 (3 other biounits)

EV-A71 strain 11316 complexed with tryptophan dendrimer MADAL_0385

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 16 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.111, A:I.111, A:I.113, A:F.131, A:F.135, A:F.135, A:F.135, A:F.137, A:F.155, A:F.155, A:V.192, A:Y.201, A:W.203, A:N.228, A:M.230, A:F.233 Hydrogen bonds: A:I.113, A:T.114, A:T.114, A:N.228 SPH.2: 16 residues within 4Å: Chain E: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 20 PLIP interactions: 20 interactions with chain E Hydrophobic interactions: E:I.111, E:I.111, E:I.113, E:F.131, E:F.135, E:F.135, E:F.135, E:F.137, E:F.155, E:F.155, E:V.192, E:Y.201, E:W.203, E:N.228, E:M.230, E:F.233 Hydrogen bonds: E:I.113, E:T.114, E:T.114, E:N.228 SPH.3: 16 residues within 4Å: Chain I: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 20 PLIP interactions: 20 interactions with chain I Hydrophobic interactions: I:I.111, I:I.111, I:I.113, I:F.131, I:F.135, I:F.135, I:F.135, I:F.137, I:F.155, I:F.155, I:V.192, I:Y.201, I:W.203, I:N.228, I:M.230, I:F.233 Hydrogen bonds: I:I.113, I:T.114, I:T.114, I:N.228 SPH.4: 16 residues within 4Å: Chain M: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 20 PLIP interactions: 20 interactions with chain M Hydrophobic interactions: M:I.111, M:I.111, M:I.113, M:F.131, M:F.135, M:F.135, M:F.135, M:F.137, M:F.155, M:F.155, M:V.192, M:Y.201, M:W.203, M:N.228, M:M.230, M:F.233 Hydrogen bonds: M:I.113, M:T.114, M:T.114, M:N.228 SPH.5: 16 residues within 4Å: Chain Q: I.111, D.112, I.113, T.114, F.131, F.135, F.137, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 20 PLIP interactions: 20 interactions with chain Q Hydrophobic interactions: Q:I.111, Q:I.111, Q:I.113, Q:F.131, Q:F.135, Q:F.135, Q:F.135, Q:F.137, Q:F.155, Q:F.155, Q:V.192, Q:Y.201, Q:W.203, Q:N.228, Q:M.230, Q:F.233 Hydrogen bonds: Q:I.113, Q:T.114, Q:T.114, Q:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, L. et al., Viral engagement with host (co-)receptors blocked by a novel class of tryptophan dendrimers that targets the 5-fold-axis of the enterovirus-A71 capsid. Plos Pathog. (2019)

Release Date

2019-04-24

Peptides

VP1: AEIMQ
VP2: BFJNR
VP3: CGKOS
VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

VP1

VP2

VP3

VP4

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