SMTL ID : 6dm4.1 (1 other biounit)

Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila in complex with Homo sapiens Shc1 phospho-Tyr317 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x PRO- SER- PTR- VAL- ASN- VAL- GLN: Shc1 phospho-Tyr317 peptide(Non-covalent)

PRO-SER-PTR-VAL-ASN-VAL-GLN.1: 13 residues within 4Å: Chain A: R.42, S.44, S.45, A.59, H.69, S.70, I.71, R.72, I.84, N.85, T.86, A.87, K.90 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.71, A:R.72, A:T.86 Hydrogen bonds: A:S.45, A:S.70, A:S.70, A:N.85, A:T.86, A:T.86, A:A.87, A:K.90 Water bridges: A:R.42, A:R.42 Salt bridges: A:R.42, A:R.72 pi-Cation interactions: A:R.72

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.16, H.17, A.37, E.38, F.39 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.38, A:F.39, A:F.39 Salt bridges: A:R.16, A:H.17 SO4.3: 3 residues within 4Å: Chain A: K.19, Y.31, S.35 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.31, A:S.35 Water bridges: A:K.19, A:K.19 Salt bridges: A:K.19 SO4.4: 5 residues within 4Å: Chain B: R.42, S.44, S.45, A.59, R.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.45 Salt bridges: B:R.42, B:R.72 SO4.5: 4 residues within 4Å: Chain B: R.16, H.17, A.37, E.38 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.38 Water bridges: B:R.16, B:R.16 Salt bridges: B:R.16, B:H.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneko, T., Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila in complex with Homo sapiens Shc1 phospho-Tyr317 peptide. To Be Published

Release Date

2018-06-27

Peptides

RavO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RavO

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