SMTL ID : 6dm4.2 (1 other biounit)

Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila in complex with Homo sapiens Shc1 phospho-Tyr317 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PRO- SER- PTR- VAL- ASN- VAL: Shc1 phospho-Tyr317 peptide(Non-covalent)

PRO-SER-PTR-VAL-ASN-VAL.1: 12 residues within 4Å: Chain A: R.42, S.44, S.45, A.59, H.69, S.70, I.71, R.72, I.84, N.85, T.86, A.87 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.71, A:T.86 Hydrogen bonds: A:S.45, A:S.70, A:S.70, A:N.85, A:T.86, A:T.86, A:A.87 Water bridges: A:N.112 Salt bridges: A:R.42, A:R.72 pi-Cation interactions: A:R.72 PRO-SER-PTR-VAL-ASN-VAL.2: 15 residues within 4Å: Chain B: R.42, S.44, S.45, A.59, I.68, H.69, S.70, I.71, R.72, S.83, N.85, T.86, T.92, N.112, L.115 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.71, B:R.72, B:T.86 Hydrogen bonds: B:S.45, B:S.70, B:S.70, B:S.83, B:S.83, B:N.85, B:T.86, B:T.86 Water bridges: B:R.42, B:R.42, B:S.45, B:T.92 Salt bridges: B:R.42, B:R.72 pi-Cation interactions: B:R.72

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.16, H.17, A.37, E.38, F.39 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.38, A:F.39, A:F.39 Water bridges: A:R.16 Salt bridges: A:R.16, A:H.17 SO4.4: 4 residues within 4Å: Chain B: R.16, H.17, A.37, E.38 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.38 Salt bridges: B:R.16, B:H.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneko, T., Crystal structure of the SH2 domain from RavO (Lpg1129) from Legionella pneumophila in complex with Homo sapiens Shc1 phospho-Tyr317 peptide. To Be Published

Release Date

2018-06-27

Peptides

RavO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

RavO

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