SMTL ID : 6dm8.5 (7 other biounits)

Understanding the Species Selectivity of Myeloid cell leukemia-1 (Mcl-1) inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156

2 x 6AK: 4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid(Non-covalent)

6AK.2: 15 residues within 4Å: Chain A: H.421, A.424, F.425, M.428, F.443, M.447, F.451, V.455, N.457, R.460, T.463, L.464, F.467, G.468, I.491 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.425, A:F.451, A:R.460, A:R.460, A:T.463, A:L.464, A:F.467, A:F.467, A:I.491 Hydrogen bonds: A:V.455, A:R.460 Salt bridges: A:R.460 pi-Stacking: A:F.467 Halogen bonds: A:A.424 6AK.3: 8 residues within 4Å: Chain A: Y.91, P.92, F.93, V.111, E.309, M.322, A.325, Q.326 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.91, A:Y.91, A:F.93, A:F.93, A:V.111, A:Q.326 Hydrogen bonds: A:F.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, B. et al., Understanding the Species Selectivity of Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors. Biochemistry (2018)

Release Date

2018-08-01

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1 homolog - MBP chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Induced myeloid leukemia cell differentiation protein Mcl-1 homolog - MBP chimera

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