SMTL ID : 6dm8.6 (7 other biounits)

Understanding the Species Selectivity of Myeloid cell leukemia-1 (Mcl-1) inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:D.66, A:R.67, A:E.154, A:Y.156

4 x 6AK: 4-{8-chloro-11-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1-oxo-7-(1,3,5-trimethyl-1H-pyrazol-4-yl)-4,5-dihydro-1H-[1,4]diazepino[1,2-a]indol-2(3H)-yl}-1-methyl-1H-indole-6-carboxylic acid(Non-covalent)

6AK.2: 19 residues within 4Å: Chain A: H.421, A.424, F.425, M.428, F.443, V.446, M.447, V.450, F.451, D.453, G.454, V.455, N.457, R.460, T.463, L.464, F.467, G.468, I.491 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.424, A:F.425, A:V.446, A:F.451, A:R.460, A:T.463, A:F.467, A:I.491 Hydrogen bonds: A:V.455, A:R.460 Salt bridges: A:R.460 pi-Stacking: A:F.467 pi-Cation interactions: A:R.460 Halogen bonds: A:A.424 6AK.3: 11 residues within 4Å: Chain A: H.65, F.93, D.96, A.97, V.111, Y.172, V.262, I.330, N.333 Ligands: 6AK.4, 6AK.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.93, A:F.93, A:F.93, A:A.97, A:Y.172, A:Y.172, A:I.330, A:I.330, A:I.330 6AK.4: 7 residues within 4Å: Chain A: Y.91, F.93, M.322, A.325, Q.326 Ligands: 6AK.3, 6AK.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.91, A:F.93, A:F.93, A:F.93, A:M.322 6AK.5: 5 residues within 4Å: Chain A: Y.168, Q.326, I.330 Ligands: 6AK.3, 6AK.4 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, B. et al., Understanding the Species Selectivity of Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors. Biochemistry (2018)

Release Date

2018-08-01

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1 homolog - MBP chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Induced myeloid leukemia cell differentiation protein Mcl-1 homolog - MBP chimera

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