SMTL ID : 6do2.1

Crystal structure of human GRP78 in complex with 7-deaza-2'-C-methyladenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x H5V: 7-(2-C-methyl-beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

H5V.1: 18 residues within 4Å: Chain A: T.13, Y.14, I.36, L.200, G.201, G.202, G.230, E.231, E.268, K.271, R.272, S.275, G.338, G.339, S.340, R.342, I.343, D.366 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.272 Hydrogen bonds: A:E.268, A:K.271, A:S.275, A:S.275, A:G.339, A:S.340, A:R.342 H5V.2: 16 residues within 4Å: Chain B: T.13, Y.14, I.36, G.201, G.202, G.230, E.231, E.268, K.271, R.272, S.275, G.339, S.340, R.342, I.343, D.366 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.272 Hydrogen bonds: B:E.268, B:K.271, B:S.275, B:S.275, B:G.339, B:S.340, B:R.342, B:D.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrie, R.P. et al., Crystal structure of human GRP78 in complex with 7-deaza-2'-C-methyladenosine. To Be Published

Release Date

2019-06-12

Peptides

Endoplasmic reticulum chaperone BiP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Endoplasmic reticulum chaperone BiP

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