SMTL ID : 6drx.1

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x H8G: N,N-diethyl-N'-[(8alpha)-6-methyl-9,10-didehydroergolin-8-yl]urea(Non-covalent)

H8G.1: 17 residues within 4Å: Chain A: W.96, L.97, D.100, V.101, S.104, T.105, V.173, L.174, F.182, G.186, S.187, A.190, W.343, F.346, N.350, V.372, Y.376 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.96, A:L.97, A:V.101, A:F.182, A:F.182, A:F.346 Hydrogen bonds: A:D.100, A:G.186 Salt bridges: A:D.100 pi-Stacking: A:F.347

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 10 residues within 4Å: Chain A: I.26, I.30, I.31, I.34, G.35, T.38, L.39, Y.400, I.401, Y.405 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.26, A:I.30, A:I.31, A:I.31, A:I.34, A:I.34, A:T.38 Hydrogen bonds: A:Y.400

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 8 residues within 4Å: Chain A: S.115, M.198, I.199, Y.202, T.205, L.332, G.333, F.336 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.199 Hydrogen bonds: A:S.115, A:T.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCorvy, J.D. et al., Structural determinants of 5-HT2Breceptor activation and biased agonism. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-08-29

Peptides

5HT2B receptor, BRIL chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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5HT2B receptor, BRIL chimera

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