SMTL ID : 6dy7.1

WDR5 in complex with a WIN site inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x HH7: N-[3-(2,4-dichlorophenoxy)propyl]-1H-imidazol-2-amine(Non-covalent)

HH7.1: 15 residues within 4Å: Chain A: A.17, V.18, S.19, S.61, D.62, F.103, C.104, S.145, F.189, Y.230, C.231, F.233, I.275, L.291 Ligands: DMS.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.103, A:Y.230, A:I.275, A:L.291 Hydrogen bonds: A:S.61, A:C.231 pi-Stacking: A:F.103

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: S.19, A.35, G.59, I.60, S.61, D.77 Ligands: HH7.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.77

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.191, N.235, A.278, C.279 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.235, A:C.279 Water bridges: A:K.191, A:K.191, A:K.191, A:F.236, A:C.279 Salt bridges: A:K.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aho, E.R. et al., Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity. Cell Rep (2019)

Release Date

2019-03-13

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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