SMTL ID : 6dya.1

WDR5 in complex with a WIN site inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

monomer

Ligands

1 x HHM: N-[(3,5-dichlorophenyl)methyl]-3-[(1H-imidazol-1-yl)methyl]benzamide(Non-covalent)

HHM.1: 13 residues within 4Å: Chain A: S.20, S.62, F.104, F.120, P.144, V.145, S.146, Y.162, K.230, Y.231, C.232, F.234, I.276 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.120, A:P.144, A:I.276, A:I.276 Hydrogen bonds: A:C.232 pi-Stacking: A:F.104, A:F.104, A:Y.162 Halogen bonds: A:V.145

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.192, N.236, A.279, C.280 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.280 Water bridges: A:K.192, A:F.237 Salt bridges: A:K.192

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: W.30, V.87 No protein-ligand interaction detected (PLIP) DMS.4: 4 residues within 4Å: Chain A: E.122, P.139, H.141, S.142 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aho, E.R. et al., Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity. Cell Rep (2019)

Release Date

2019-03-13

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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