SMTL ID : 6e3e.1 (1 other biounit)

Structure of RORgt in complex with a novel inverse agonist.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: H.187, L.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.183, A:E.183 Salt bridges: A:H.187, A:K.205

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 3 residues within 4Å: Chain A: E.40, Y.44, K.47 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.44 Hydrogen bonds: A:E.40, A:K.47

1 x HQ7: 5-[(5R)-5-[(7-fluoro-1,1-dimethyl-2,3-dihydro-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridin-6(5H)-yl]-5-oxopentanoic acid(Non-covalent)

HQ7.3: 15 residues within 4Å: Chain A: Q.22, L.23, C.56, H.59, L.60, V.97, R.100, M.101, A.104, V.112, F.113, F.114, E.115, F.124, I.136 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.23, A:A.104, A:V.112, A:F.114, A:F.124, A:F.124, A:F.124, A:I.136 Hydrogen bonds: A:F.113, A:E.115 Salt bridges: A:H.59 Halogen bonds: A:C.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yukawa, T. et al., Design, Synthesis, and Biological Evaluation of Retinoic Acid-Related Orphan Receptor gamma t (ROR gamma t) Agonist Structure-Based Functionality Switching Approach from In House ROR gamma t Inverse Agonist to ROR gamma t Agonist. J.Med.Chem. (2019)

Release Date

2019-07-17

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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