SMTL ID : 6e3e.2 (1 other biounit)

Structure of RORgt in complex with a novel inverse agonist.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: V.68, K.72 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.72

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: E.40, G.43, Y.44, K.47, R.55 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.44 Hydrogen bonds: A:E.40, A:Y.44, A:K.47, A:R.55, A:R.55

1 x HQ7: 5-[(5R)-5-[(7-fluoro-1,1-dimethyl-2,3-dihydro-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridin-6(5H)-yl]-5-oxopentanoic acid(Non-covalent)

HQ7.3: 16 residues within 4Å: Chain A: Q.22, L.23, C.56, H.59, L.60, V.97, R.100, M.101, A.104, V.112, F.113, F.114, E.115, F.124, I.136, F.137 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.23, A:L.60, A:A.104, A:V.112, A:F.114, A:F.124, A:F.124, A:I.136, A:F.137 Hydrogen bonds: A:F.113, A:E.115 Water bridges: A:R.103 Salt bridges: A:H.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yukawa, T. et al., Design, Synthesis, and Biological Evaluation of Retinoic Acid-Related Orphan Receptor gamma t (ROR gamma t) Agonist Structure-Based Functionality Switching Approach from In House ROR gamma t Inverse Agonist to ROR gamma t Agonist. J.Med.Chem. (2019)

Release Date

2019-07-17

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nuclear receptor ROR-gamma

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