SMTL ID : 6e3z.3 (2 other biounits)

Structure of Bace-1 in complex with Ligand 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

2 x HRV: N-{3-[(2R,3R)-5-amino-3-methyl-2-(trifluoromethyl)-3,6-dihydro-2H-1,4-oxazin-3-yl]-4-fluorophenyl}-3,5-dichloropyridine-2-carboxamide(Non-covalent)

HRV.1: 16 residues within 4Å: Chain A: G.58, Q.59, G.60, L.77, D.79, G.81, Y.118, F.155, I.157, W.162, D.275, S.276, G.277, T.278, T.279, A.382 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.77, A:Y.118, A:W.162 Hydrogen bonds: A:D.79, A:G.277, A:T.278 Water bridges: A:Y.61, A:D.275 HRV.2: 3 residues within 4Å: Chain A: T.43, G.44, S.45 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.43, A:S.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gijsen, H.J.M. et al., Discovery and Chemical Development of JNJ-50138803, a Clinical Candidate BACE1 Inhibitor. Acs Symp.Ser. (2020)

Release Date

2019-09-11

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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