SMTL ID : 6od6.2 (2 other biounits)

Structure of BACE-1 in complex with Ligand 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x M7D: N-{3-[(3R)-1-amino-3-methyl-3,4-dihydropyrrolo[1,2-a]pyrazin-3-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide(Non-covalent)

M7D.1: 18 residues within 4Å: Chain A: G.58, Q.59, G.60, Y.61, L.77, D.79, G.81, S.82, Y.118, F.155, I.157, I.165, D.275, S.276, G.277, T.278, T.279, A.382 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.118, A:I.165 Hydrogen bonds: A:D.79, A:G.277

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.234, L.235, W.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.234, A:S.234 Water bridges: A:L.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oehlrich, D. et al., Evaluation of a Series of beta-Secretase 1 Inhibitors Containing Novel Heteroaryl-Fused-Piperazine Amidine Warheads. Acs Med.Chem.Lett. (2019)

Release Date

2019-09-25

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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